Hi Jacob,
Thats intended. The sync is a pull from Jackrabbit. The behavior is intended. If you want to add things to the custom folder under folders `pages` , `static`...etc you need to create it inside Jackrabbit.
https://gluu.org/docs/gluu-server/installation-guide/install-kubernetes/#working-with-jackrabbit
```
/opt/gluu/jetty/oxauth/
|-- custom
| |-- i18n
| |-- libs
| |-- pages
| `-- static
```