>> Port address(es) 1689
4444
8009
1389 already in use,
Please stop the service(s) listening on one of 1689
4444
8009
1389 ports and execute /etc/init.d/gluu-server start
Seems like Gluu-server container wasn't stopped properly. You can kill those processes which are running in these ports and try to stop-start Gluu-Server container again.